Influence of vermicompost amendments on the soil microbiota

As occurred with compost amendments, vermicompost has also been found to provide manifold benefits when used as a total or partial substitute for mineral fertiliser in peat — based artificial greenhouse potting media and as a soil amendment in field studies [95]. Among the advantages of vermicompost as a soil amendment is its potential to maintain soil organic matter, foster nutrient availability, suppress plant diseases and increase soil microbial abundance and activity. However, although several studies have tried to disentangle the complex interactions between vermicompost application and soil microbial properties, most of them are frequently not comparable to each other due to differences in the experimental design, the land-use and vermicompost type (i. e., different starting material and earthworm species), the dose of application as well as the duration of experiments, among others. Despite these limitations, some recent findings have been made, thereby contributing to better understand whether and to what extent vermicompost amendments affect soil microbial biomass, activity and community structure. For instance, Arancon et al. [96] observed that a single application of vermicompost to a strawberry crop resulted in a significantly higher increase in soil microbial biomass than the application of an inorganic fertiliser, regardless of the dose used. Increases in the microbial activity and in the activity of the soil enzymes involved in the release of the main plant macronutrients with vermicompost amendments, have also been signalled in several studies [96-98]. Such increase could be due to the fact that soil microorganisms degrade organic matter through the production of a variety of extracellular enzymes and, in turn an input of organic matter is expected to be accompanied by a higher enzymatic activity. Moreover, the added material may contain intra — and extracellular enzymes and may also stimulate microbial activity in the soil [99]. Additionally, vermicompost has been found to promote the establishment of a specific microbial community in the rhizosphere different from that of plants supplemented with mineral fertilisers or other types of organic fertilisers such as manure [100]. Inorganic fertilisation only supplies N, P and K, whereas organic fertilisers also supply different amounts of C and macro — and micronutrients, which can select for microbial communities with different nutritional requirements [95]. Moreover, microbial communities in vermicompost are metabolically more diverse than those in manure [17], and may be incorporated, at least in the short-term, to soils [101]. Interestingly, Aira et al. [100] observed that the effect of the addition of vermicompost occurred despite the low dose used (25% of total fertilisation), and despite the short duration of the experiment (four months). Jack et al. [102] also examined how different organic transplant media amendments, including vermicompost, thermogenic compost and industry standard amendments affected the rhizosphere bacterial communities of organically produced tomato plants. They found differences in the bacterial community structure between the different amendments and these differences persisted for at least one month after seedlings were transplanted to the field. Since both compost and vermicompost were made from the same parent material, such differences could be due to the way in which the organic matter was processed prior to the amendment [102]. Previous comparisons between vermicompost and compost with respect to microbial communities [103-105] are difficult to interpret because different feedstocks were used for each process. Compost feedstocks are known to alter the material’s effects on the structure of the microbial communities [86], so it is essential to use composts made from the same feedstock in order to draw valid comparisons between the two biological processes. Furthermore, it may be expected that different hybrids or plant genotypes will respond differently to vermicompost, considering that plant genotype determines important differences in nutrient uptake capacity, nutrient use efficiency and resource allocation within the plant. Different genotypes may therefore enhance root growth or modify root exudation patterns in order to increase nutrient uptake [100], and all of these strategies will determine the establishment of different interactions with the microbial communities at the rhizosphere level. Indeed, after the application of vermicompost to sweet corn crops, these authors found important differences in the rhizosphere microbial community of two genotypes from cultivars of maize, with the sugary endosperm mutation (sul) and with the shrunken endosperm mutation (sh2), which differ in their C storage patterns.

Furthermore, recent studies have demonstrated the presence of various bacteria, which are useful for different biotechnological purposes, in diverse vermicomposts [106-107], reinforcing that the biological component (i. e., the microbial community composition) of a vermicompost largely determines its usefulness in agriculture and other applications, such as soil restoration and bioremediation. For instance, Fernandez-Gomez et al. [106] detected the presence of Sphingobacterium, Streptomyces, Alpha-Proteobacteria, Delta-Proteobacteria and Firmicutes in diverse vermicomposts, irrespective of the parent material used for the process, by applying DGGE and COMPOCHIP, thereby demonstrating the usefulness of both techniques to assess the potential of vermicomposts as bioactive organic materials. Indeed, disease suppressiveness is obviously linked to the microbiota added with the vermicompost, along with the biological and physicochemical characteristics of the native soil microbial community. However, despite the large body of scientific evidence showing the positive effects of vermicompost regarding the suppression of soil-borne plant fungal diseases (reviewed in [75,108]), it is still necessary to obtain a deeper understanding of the mechanisms involved and the main factors influencing such suppressing effects. According to the mechanisms proposed for compost [68-69], disease suppression by vermicompost may be attributed to either direct effects or to the induction of systemic resistance in the plant. Direct suppression of the pathogen by the vermicompost-associated microflora and/or microfauna may be general or specific, depending on the existence of a single suppressive agent or the joint action of several agents, and the proposed mechanisms are competition, antibiosis and parasitism. Some of the indirect effects of vermicompost have been related to changes in the microbiological properties of the soil or the potting media. Processing by earthworms during vermicomposting has a strong effect on the microbial community structure and activity of the initial waste [8]. Vermicompost therefore has a rather different microbial community structure than the parent waste, with lower biomass but enhanced metabolic diversity [18]. Application of such a microbiologically active organic substrate may thus have important effects on the microbial and biochemical properties of soil or greenhouse potting media thereby influencing plant growth. Moreover, vermicompost may affect directly the plant growth via the supply of nutrients, as it constitutes a slow-release fertiliser that supplies the plant with a gradual and constant source of nutrients, and/or through the supply of plant growth regulating substances [95].