Nucleotide sugars

The building blocks for polysaccharide synthesis are nucleotide sugars (NDP-sugars). The sugar moieties in NDP-sugars are incorporated into growing polysaccharide polymers by glycosyltransferases (GTs). A major contributor to glycan diversity is the number of NDP — sugars that an organism produces. In the plant kingdom, 30 different NDP-sugars have been identified (403). It is estimated that over 50 enzymes are directly involved in the synthesis of NDP-sugars in plants. To date only 22 NDP-sugar biosynthetic genes have been functionally identified [see (404) and text below] (Table 5.6). While it is widely accepted that NDP-sugars are the precursors for cell wall polysaccharides, glycoproteins, and glycolipids, it should be kept in mind that in addition to NDP-sugars, lipid-bound sugars are also sugar donors for the synthesis of glycans (for example, synthesis of the N-glycan core of glycoproteins in eukaryotes and addition of galacturonic acid to Rhizobium lipopolysaccharides via a prenyl phosphate-galacturonic acid donor substrate) (405, 406). Whether the initiation of plant cell wall polysaccharide synthesis is mediated by a core glycan that requires lipid-bound sugars at the ER, remains to be established.

Relatively few NDP-sugars are made inside the ER and Golgi apparatus where glycans are made. Most NDP-sugars are produced in the cytosol. Thus, specific NDP-sugar trans­porters exist to facilitate the import of NDP-sugars from the cytosol into the correct lumen of the endomembrane where GTs reside. It is predicted that ~20 NDP-sugar transporters exist in plants of which functionally only six have been characterized (A. Orellana, personal communication). These transporters are localized to the ER and Golgi apparatus (93, 407). While some of the NDP-sugar transporters are specific, the relatively low number of trans­porters would suggest that some NDP-sugar transporters may accept several NDP-sugars. In addition to the need for GTs, NDP-sugars, and their transporters for wall polysaccharide synthesis, some wall polysaccharides (i. e. pectins and hemicelluloses) are also modified by acetyl and methyl groups. Thus, diverse acetyltransferases and methyltransferases are also required. Little is known about their substrate specificity, as none has been biochemically purified. Basic questions such as what controls the degree and number of methyl modifi­cations on a specific glycan remain elusive. Hence, no wall-related acetyl — or methyltrans — ferases have been functionally cloned. The methyltransferases (MetTs) and acetyltransferases (AceTs) generally utilize S-adenosyl-L-methionine (SAM) and acetyl-CoA as methyl and acetyl donors, respectively (229, 285, 335, 337). A recent study in A. Orellana’s laboratory led to the biochemical identification of a SAM transporter activity in the Golgi apparatus of pea (A. Orellana, personal communication). Beyond synthesis, plant glycans undergo further modification, including degradation and remodeling by specific glycosidases and esterases. Due to space limitations, transporters and glycan modifying enzymes will not be summarized in this review, rather, the reader is referred to a recent review (246).

Wall biogenesis is a complex cellular event similar to an assembly line. It requires the supply of a wide range of precursors targeted to different subcellular locations for a process that begins in one subcompartment and continues in other subcompartments as the glycans are synthesized and modified. During this process the concerted action of a range of cytosolic,

Table 5.6 NDP-sugar biosynthetic genes

 

Подпись: 138 Biomass Recalcitrance

Mutant, isoforms (putative?), locus

(aa)

Cell location

Sloppy, At5g52560

614

UGIcPP#1

470

At5g17310

469

UGIcPP#2

At3g03250

SuSyl, At5g20830

808

Mito

SuSy2, At3g43190

807

Cyto

SuSy3, At5g49190

808

Golgi

At4g02280

809

ADG1, Aps1,

520

Chlo

At5g48300

476

Chlo

Aps2, At1 g05610?

521

Chlo

Арі 1, ADG2

523

At5g19220

521

Apl2, At1g27680

520

Apl3, At4g39210 Apl4, At2g21 590

GalK, At3g06580

496

UGE1, At1g12780

351

Cyto

UGE2,At4g23920

350

Cyto

UGE3, At1 g63180

351

Cyto

Rhd1,UGE4, At1g64440

348

Cyto-Golgi

UGE5, At1g10960

351

associated

Urs1, At1 g78570

669?

Cyto

At3g14790

667

Rhm2, mum4, At1g53500 NRS/er, At1 g63000

301

Ugd1, At5g39320

480

Ugd2, At3g29360?

480

Ugd3, At5g1 5490

480

Ugd4, At1g26570

481

 

Enzyme

U DP-sugar PPase UDP-GIc PPase

Sucrose synthase

ADP-GIc PPase

 

Activity

Sugar-1 — P + UTP U DP-sugar + РРІ

Glc-1 — P + UTP+* UDP-GIc+ РРІ

 

Syn

Sloppy

UGlc PPase

 

Sucrose + UDP UDP-GIc + Frc

 

SuSy

 

Glc-1 — P + ATP ADP-GIc + РРІ

 

AGPase small sub AGPase large sub LS

 

Gal + ATP Gal-1 — P + ADP UDP-GIc UDP-Gal

 

Gall, GalK UGE

 

Gal К

UDP-GIc 4-epimerase

UDP-Rha synthase

UDP-Rha epimerase/reductase UDP-GIc dehydrogenase

 

UDP-GIc + NAD(P)H ^UDP-Rha

 

URS

Rhm

NRSer

UGlcDH

UGD

 

UDP-4keto 6deoxyGlc + NAD(P)H -^UDP-Rha

UDP-GIc + 2NAD —)>UDP-GlcA + 2NADH

 

Подпись: UDP-GIcA 4-epimerase UDP-GIcA UDP-GalA UGlcAE GAE UDP-GIcA decarboxylase UDP-GIcA -* UDP-Xyl UXS Подпись: UDP-Api/UDP-Xyl synthase UDP-GIcA + NAD^ UDP-Api + UDP-Xyl AXS UAS AraK Ara + ATP Ara-1 -P + ADP Aral UDP-Xyl 4-epimerase UDP-D-Xyl UDP-D-Ara UXE G DP-Man PPase Man-1 -P + GTP GDP-Man + РРІ GMPPase GDP-Man 4,6-dehydratase GDP-D-Man -* GDP-4keto 6deoxyMan GMD GDP-Man 3,5 epimerase/ 4-reducatase GDP-4keto 6deoxyMan -* GDP-L-Fuc GER GDP-Man 3',5' epimerase GDP-D-Man -* GDP-L-Gal GDP-D-Man -* GDP-L-Gul GME KDO-8-P synthase PEP + D-arabinose 5-phosphate —>■ KDO-8-P kdsA Подпись: CMP-KDO synthaseПодпись: kdsBПодпись: KDO + СТР -* CMP-KDOUGlcAEI, At2g45310 UGIcAE2, Gae6, At3g23820 UGIcAE3, Gael, At4g30440 UGIcAE4, At4g00110 UGIcAE5, Gae2 At1g02000? UGIcAE6, Gae5, At4g12250?

Uxs1, At3g53520 Uxs2, At3g62830 Uxs4, At2g47650 Uxs3, At5g59290 Uxs5, At3g46440 Uxs6, At2g28760

AXS1, At1 g08200 At2g27860

Aral, At4g16130

Mur4, UXE1, At1g30620 UXE2, At2g34850?

Uxe3, At3g34850 Uxe4, At5g44480?

Cyt1, At2g39770 At4g30570?

GMD1, At5g66280?

GMD2, mur1, At3g51160

Ger1, At1g73250 Ger2, At1 g1 7890

Gme1, At5g28840

kdsA1, At1 g79500 kdsA2, At5g09730

Подпись:Подпись: Cell Wall Polysaccharide Synthesis 139kdsB, At1 g53000

ER, and Golgi enzymes, as well as ER, Golgi, vesicular and plasma membrane proteins is required to facilitate the production of one type of glycan. Therefore, knowledge regarding the catalytic topology of each membrane enzyme and the cellular machinery that partitions, regulates, and traffics each protein and the corresponding glycan-intermediates, to their correct subcompartments must be understood to truly comprehend wall assembly and synthesis.